usefragsph not on
There are 24 ligand heavy atoms
Ligand center of coords (x y z): 40.1005416666667 -13.8746666666667 5.90383333333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1705
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 906
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 906
Number of spheres polar: 194, nonpolar: 502, out of current total: 906
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 30.11890 50.06960 -23.87439 -3.87937 -4.07797 15.70940
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 490
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 429
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 405
Spheres center of coords (x y z): 40.4601880987655 -11.7916184444444 2.80998879012346
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.20211629773621
Final number of output spheres is: 60
Number of polar spheres: 26
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 24