usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): -2.22134615384615 57.7985769230769 34.0591153846154 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1529 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 744 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 744 Number of spheres polar: 222, nonpolar: 410, out of current total: 744 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.13973 7.75011 47.82300 64.03827 24.06710 44.05231 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 213 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 171 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 146 Spheres center of coords (x y z): -4.90780109589041 55.0323467808219 32.4839980136986 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.14046131783533 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 26