usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 32.28616 27.5742 40.70084 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1681 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 799 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 799 Number of spheres polar: 265, nonpolar: 414, out of current total: 799 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.31000 42.14655 17.63700 37.49224 30.72144 50.61453 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 377 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 324 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 289 Spheres center of coords (x y z): 29.2133342906574 28.8979346712803 37.0036180968858 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.36111989555118 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 25