Distance from surface specified: 1.80 There are 26 ligand heavy atoms Ligand center of coords (x y z): -1.38638461538462 58.1396538461539 33.1997307692308 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 18577 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 13755 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 12424 Number of spheres polar: 7376, nonpolar: 3571, out of current total: 12424 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -15.38420 12.61360 44.14300 72.13780 19.20200 47.17060 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1426 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 732 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 710 Spheres center of coords (x y z): -3.46161295774647 53.4104081690141 33.6470785915493 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.8568566926542 Final number of output spheres is: 200 Number of polar spheres: 126 Number of nonpolar spheres: 66 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 26