usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 11.4354 -0.4628 23.6995333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1361 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 730 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 729 Number of spheres polar: 300, nonpolar: 277, out of current total: 729 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.44121 18.33093 -9.54742 9.35933 13.78159 33.66792 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 357 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 286 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 258 Spheres center of coords (x y z): 8.03017093023256 0.717532286821705 26.761987248062 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.18867613658132 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 15