usefragsph not on
There are 12 ligand heavy atoms
Ligand center of coords (x y z): 12.3113333333333 1.43141666666667 23.43375
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1329
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 703
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 703
Number of spheres polar: 284, nonpolar: 275, out of current total: 703
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.32658 22.30254 -8.26514 11.27640 13.57626 33.42745
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 330
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 268
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 245
Spheres center of coords (x y z): 8.36464746938776 0.884246122448979 26.4074288979592
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.25045753188422
Final number of output spheres is: 60
Number of polar spheres: 14
Number of nonpolar spheres: 38
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 12