usefragsph not on There are 8 ligand heavy atoms Ligand center of coords (x y z): 13.71725 0.9585 22.42725 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1105 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 566 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 566 Number of spheres polar: 209, nonpolar: 236, out of current total: 566 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.72095 23.70669 -9.00496 10.94974 13.53521 32.40252 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 163 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 125 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 102 Spheres center of coords (x y z): 9.15039323529412 0.226665882352941 25.9120398039216 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.31898879483692 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 8