usefragsph not on
There are 9 ligand heavy atoms
Ligand center of coords (x y z): 12.9417777777778 0.422 22.6125555555556
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1294
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 667
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 667
Number of spheres polar: 271, nonpolar: 238, out of current total: 667
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.95865 22.91321 -9.57057 10.22144 13.59367 32.61250
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 187
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 138
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 120
Spheres center of coords (x y z): 8.43336266666667 0.237269333333333 26.11113875
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.2181751189512
Final number of output spheres is: 45
Number of polar spheres: 17
Number of nonpolar spheres: 14
Number of spheres that are near neither polar nor nonpolar receptor atoms: 14
Final number of spheres that are from crystallographic ligand: 9