usefragsph not on
There are 9 ligand heavy atoms
Ligand center of coords (x y z): 12.9417777777778 0.422 22.6125555555556
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1294
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 667
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 667
Number of spheres polar: 271, nonpolar: 238, out of current total: 667
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.95865 22.91321 -9.57057 10.22144 13.59367 32.61250
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 295
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 255
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 228
Spheres center of coords (x y z): 8.6061575 0.336995043859649 25.7912654824561
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.7927046819314
Final number of output spheres is: 60
Number of polar spheres: 19
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 13
Final number of spheres that are from crystallographic ligand: 9