usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 11.5041428571429 -0.391071428571429 23.5097142857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1649 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1140 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1139 Number of spheres polar: 353, nonpolar: 595, out of current total: 1139 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.50566 21.47292 -10.35717 9.55198 13.58281 33.46748 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 308 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 262 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 247 Spheres center of coords (x y z): 11.1538470445344 2.233794048583 25.8591879352227 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.44133736128103 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 14