usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 10.5084705882353 0.602235294117647 23.9149411764706 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1744 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 764 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 764 Number of spheres polar: 320, nonpolar: 278, out of current total: 764 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.58553 18.28756 -9.21201 10.48815 13.91865 33.91166 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 212 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 167 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 155 Spheres center of coords (x y z): 6.92989929032258 0.947722064516128 27.2941528387097 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.46572487710938 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 17