usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 9.28134782608695 0.982173913043478 24.6923043478261 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1837 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 941 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 941 Number of spheres polar: 423, nonpolar: 322, out of current total: 941 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.68584 18.72292 -8.86823 10.96053 14.76834 34.68316 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 438 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 366 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 340 Spheres center of coords (x y z): 6.67737194117647 1.06523570588235 27.2574197647059 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.76203605674272 Final number of output spheres is: 60 Number of polar spheres: 27 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 23