usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 3.48028 4.06556 57.89876
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1628
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 984
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 984
Number of spheres polar: 384, nonpolar: 421, out of current total: 984
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.31256 13.46462 -5.51137 14.06525 47.91371 67.06500
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 468
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 405
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 354
Spheres center of coords (x y z): 6.48532367231638 3.67798194915254 55.3311865254237
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.95928635678555
Final number of output spheres is: 60
Number of polar spheres: 23
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 25