usefragsph not on There are 12 ligand heavy atoms Ligand center of coords (x y z): 14.8649166666667 56.8781666666667 24.2420833333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1202 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 710 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 710 Number of spheres polar: 298, nonpolar: 252, out of current total: 710 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.14402 24.84850 47.01100 65.85531 14.27440 34.23864 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 335 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 275 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 249 Spheres center of coords (x y z): 17.8838273895582 55.4136657429719 27.0027036947791 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.28902309492847 Final number of output spheres is: 60 Number of polar spheres: 41 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 12