usefragsph not on There are 12 ligand heavy atoms Ligand center of coords (x y z): 11.3236666666667 -1.05558333333333 24.0339166666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1248 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 704 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 704 Number of spheres polar: 275, nonpolar: 268, out of current total: 704 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.33496 18.73876 -10.63303 8.90316 14.06541 34.00495 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 341 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 277 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 256 Spheres center of coords (x y z): 7.6817289453125 0.690126328125 27.3865365625 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.78358055993545 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 12