usefragsph not on
There are 12 ligand heavy atoms
Ligand center of coords (x y z): 11.3711666666667 -1.28366666666667 23.9415
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1212
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 676
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 676
Number of spheres polar: 261, nonpolar: 257, out of current total: 676
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.42299 18.30165 -10.60156 8.69127 13.95985 33.92237
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 310
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 257
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 235
Spheres center of coords (x y z): 8.69301868085106 0.42704685106383 26.7094310212766
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.84346573370402
Final number of output spheres is: 60
Number of polar spheres: 25
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 12