usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 10.6365 0.579555555555556 24.0936111111111 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1641 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 805 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 805 Number of spheres polar: 322, nonpolar: 304, out of current total: 805 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.67852 18.74915 -9.36746 10.55740 14.09449 34.07479 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 217 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 176 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 159 Spheres center of coords (x y z): 7.39672283018868 0.674536918238994 27.1707957861635 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.0363730354405 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 18