usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 10.0669444444444 1.09672222222222 24.2581666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1567 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 792 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 792 Number of spheres polar: 296, nonpolar: 305, out of current total: 792 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.07335 18.06939 -8.88755 10.90636 14.30757 34.22058 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 223 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 182 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 168 Spheres center of coords (x y z): 6.75255928571429 1.48364107142857 26.9070679761905 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.32083238219804 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 12 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 18