usefragsph not on There are 13 ligand heavy atoms Ligand center of coords (x y z): 11.4666153846154 -0.984076923076923 23.7947692307692 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1380 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 755 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 755 Number of spheres polar: 331, nonpolar: 257, out of current total: 755 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.50161 21.45900 -10.69422 9.01276 14.00239 33.79362 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 352 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 296 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 268 Spheres center of coords (x y z): 7.79298858208956 1.03303294776119 26.9512329477612 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.71721954802938 Final number of output spheres is: 60 Number of polar spheres: 31 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 13