usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 11.532 -0.492 23.7352142857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1265 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 708 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 708 Number of spheres polar: 319, nonpolar: 226, out of current total: 708 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.54013 18.69597 -10.05585 9.20442 13.73975 33.72964 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 320 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 249 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 227 Spheres center of coords (x y z): 8.08730211453745 0.713892995594714 27.1145095154185 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.29337351520151 Final number of output spheres is: 60 Number of polar spheres: 32 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 14