usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 11.7528125 -0.1964375 23.347125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1289 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 698 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 698 Number of spheres polar: 320, nonpolar: 248, out of current total: 698 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.75444 18.43605 -10.01265 9.77212 13.50467 33.26915 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 173 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 145 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 130 Spheres center of coords (x y z): 8.2526993076923 0.276785384615385 26.3054700769231 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.64746962864033 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 16