usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 11.6604 -0.292266666666667 23.5524 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1319 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 722 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 721 Number of spheres polar: 332, nonpolar: 234, out of current total: 721 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.69448 18.21074 -10.20794 9.50177 13.60164 33.51201 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 185 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 149 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 134 Spheres center of coords (x y z): 8.11480567164179 0.618401641791045 26.5928047014925 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.26701869422588 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 15