usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 8.06248148148148 2.66588888888889 25.2225555555556 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1925 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1127 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1127 Number of spheres polar: 409, nonpolar: 458, out of current total: 1127 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.93523 16.11095 -7.18876 12.64591 15.26913 35.21260 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 331 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 265 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 248 Spheres center of coords (x y z): 4.63190939516129 2.25443322580645 26.893655 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.99662847178877 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 27