usefragsph not on
There are 27 ligand heavy atoms
Ligand center of coords (x y z): 8.04759259259259 1.75462962962963 25.3568518518519
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1884
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1012
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1012
Number of spheres polar: 377, nonpolar: 394, out of current total: 1012
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.94600 17.90072 -8.21661 11.71155 15.36836 35.34764
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 500
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 422
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 405
Spheres center of coords (x y z): 5.45147086419753 1.6858457037037 26.9286250123457
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.70513590434804
Final number of output spheres is: 60
Number of polar spheres: 12
Number of nonpolar spheres: 26
Number of spheres that are near neither polar nor nonpolar receptor atoms: 22
Final number of spheres that are from crystallographic ligand: 27