usefragsph not on
There are 27 ligand heavy atoms
Ligand center of coords (x y z): 7.90892592592593 2.013 25.131
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2012
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1020
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1020
Number of spheres polar: 364, nonpolar: 412, out of current total: 1020
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.06961 16.93947 -7.61874 12.00998 15.16149 35.12108
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 500
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 420
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 397
Spheres center of coords (x y z): 5.27075705289672 1.52139770780856 26.6302041561713
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.9453054692239
Final number of output spheres is: 60
Number of polar spheres: 15
Number of nonpolar spheres: 24
Number of spheres that are near neither polar nor nonpolar receptor atoms: 21
Final number of spheres that are from crystallographic ligand: 27