usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 8.57296153846154 2.69715384615385 24.6096153846154 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1984 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1022 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1022 Number of spheres polar: 405, nonpolar: 408, out of current total: 1022 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.42277 16.83067 -7.24280 12.64392 14.67464 34.60053 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 293 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 235 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 217 Spheres center of coords (x y z): 5.29000119815668 1.77063202764977 26.4639753917051 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.88795921153644 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 26