usefragsph not on
There are 26 ligand heavy atoms
Ligand center of coords (x y z): 8.70738461538462 2.728 24.7545384615385
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2107
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1043
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1043
Number of spheres polar: 402, nonpolar: 400, out of current total: 1043
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.27331 16.62078 -7.17993 12.70641 14.76080 34.75317
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 300
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 241
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 219
Spheres center of coords (x y z): 5.64642625570776 1.87026219178082 27.0679226484018
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.71024909344263
Final number of output spheres is: 45
Number of polar spheres: 9
Number of nonpolar spheres: 26
Number of spheres that are near neither polar nor nonpolar receptor atoms: 10
Final number of spheres that are from crystallographic ligand: 26