usefragsph not on
There are 27 ligand heavy atoms
Ligand center of coords (x y z): 9.15788888888889 1.4067037037037 27.6046296296296
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1826
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 776
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 776
Number of spheres polar: 232, nonpolar: 367, out of current total: 776
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.83366 18.45840 -8.55639 11.35036 17.62318 37.55435
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 397
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 344
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 318
Spheres center of coords (x y z): 6.47419437106919 1.55093182389937 27.7399085849057
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.54702169652207
Final number of output spheres is: 60
Number of polar spheres: 12
Number of nonpolar spheres: 39
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 27