usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 20.1243076923077 4.73926923076923 50.7301153846154 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2242 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1310 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1310 Number of spheres polar: 449, nonpolar: 528, out of current total: 1310 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.13010 30.09698 -5.03007 14.67429 40.73360 60.64941 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 401 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 333 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 295 Spheres center of coords (x y z): 20.0776517966102 6.50958091525424 53.8781710169492 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.69634074320421 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 26