usefragsph not on
There are 27 ligand heavy atoms
Ligand center of coords (x y z): 7.95155555555555 2.786 25.3992962962963
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1826
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1073
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1073
Number of spheres polar: 401, nonpolar: 398, out of current total: 1073
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.04334 15.74055 -6.99479 12.78066 15.72372 35.33617
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 337
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 259
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 240
Spheres center of coords (x y z): 4.49008858333333 1.90908683333333 26.5773232083334
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.22295201933412
Final number of output spheres is: 45
Number of polar spheres: 10
Number of nonpolar spheres: 21
Number of spheres that are near neither polar nor nonpolar receptor atoms: 14
Final number of spheres that are from crystallographic ligand: 27