Enabling DOCK Developer Scripts incl Database Preparation Intel/Linux inactives we got past inactivesDB.ism actives we got past actives.ism node-6-10.c.bkslab.org du2 starts 1 molecule processed, 0 errors convert.py (MDL SDF -> Isomeric SMILES): mols in: 1 mols out: 1 Total: 1 mols processed. mol2nam v1.9 Structure to Name Conversion OpenEye Scientific Software, February 2009 convert.py (Tripos MOL2 -> Isomeric SMILES): mols in: 1 mols out: 1 Total: 1 mols processed. mid: No such file or directory. hi: No such file or directory. lo: No such file or directory. mid: No such file or directory. first try already in then inzinc count is 0 bzcat: Can't open input file 79: No such file or directory. bzcat: Can't open input file 43: No such file or directory. convert.py (Tripos MOL2 -> MDL SDF): mols in: 1 mols out: 1 Total: 1 mols processed. count is 0 bzcat: Can't open input file 83: No such file or directory. bzcat: Can't open input file 72: No such file or directory. bzcat: Can't open input file 83: No such file or directory. bzcat: Can't open input file 75: No such file or directory. convert.py (Tripos MOL2 -> MDL SDF): mols in: 2 mols out: 2 Total: 2 mols processed. bzcat: Can't open input file 79: No such file or directory. bzcat: Can't open input file 43: No such file or directory. bzcat: Can't open input file 83: No such file or directory. bzcat: Can't open input file 72: No such file or directory. bzcat: Can't open input file 83: No such file or directory. bzcat: Can't open input file 75: No such file or directory. du2.csh script updated ligand processing Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 143, in ? result = server.similars(smiles) File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__ return self.__send(self.__name, args) File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request verbose=self.__verbose File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request return self._parse_response(h.getfile(), sock) File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response return u.close() File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close raise Fault(**self._stack[0]) xmlrpclib.Fault: MakeDOCK 2.0, modified by J.Irwin and M.Mysinger. Previous versions by D.M.Lorber, B.Q.Wei, A.N.Kirschner, and N.Huang Using scripts in /raid5/people/mysinger/xyz/dockenv. Creating binding-site residue list Creating molecular surface real 0m3.623s user 0m0.591s sys 0m0.361s Creating sphgen spheres Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 0:2140 spheres. 191. 191. 191. 191. 192. 192. 192. 192. 198. 198. 198. 202. 202. 202. 202. 202. 202. 202. 202. 202. 202. 202. 202. 202. 202. 202. 202. 202. 202. 202. 202. 203. 203. 203. 203. 203. 203. 203. 203. 203. 203. 203. 203. 203. 203. 203. 203. 203. 203. 203. 203. 203. 204. 204. 204. 204. 204. 204. 204. 204. 204. 204. 204. 204. 204. 204. 204. 204. 204. 204. 204. 204. 204. 204. 205. 206. 206. 206. 209. 209. 209. 209. 209. 209. 209. 209. 209. 209. 209. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 211. 212. 212. 212. 212. 212. 212. 212. 212. 212. 212. 212. 215. 216. 216. 216. 216. 216. 216. 216. 216. 216. 216. 216. 216. 216. 216. 216. 216. 216. 216. 216. 216. 216. 218. 218. 218. 218. 218. 218. 218. 218. 218. 218. 218. 218. 218. 218. 218. 218. 218. 218. 218. 218. 218. 218. 218. 218. 218. 218. 218. 218. 219. 219. 219. 219. 219. 219. 219. 219. 219. 219. 219. 219. 219. 219. 457. 457. 457. 457. 457. 457. 457. 457. 457. 457. 457. 457. 457. 457. 457. 457. 457. 457. 458. 460. 460. 471. 471. 472. 472. 473. 473. 473. 473. 473. 473. 473. 473. 473. 473. 473. 475. 475. 475. 475. 475. 475. 475. 475. 475. 475. 477. 477. 477. 477. 477. 477. 477. 488. 488. 488. 489. 489. 492. 492. 492. 492. 492. 492. 492. 492. 492. 492. 492. 492. 492. 492. 492. 492. 492. 519. 519. 519. 519. 521. 521. 521. 521. 521. 521. 521. 521. 521. 521. 521. 521. 521. 521. 521. 521. 521. 522. 522. 522. 522. 522. 522. 522. 522. 554. 554. 554. 554. 554. 554. 554. 554. 801. 805. 805. 805. 805. 805. 810. 810. 810. 810. 810. 810. 810. 811. 811. 811. 811. 811. 811. 811. 812. 812. 812. 812. 821. 821. 821. 821. 821. 822. 982. 982. 982. 982. 982. 982. 982. 985. 985. 985. 985. 985. 985. 985. 985. 985. 985. 985. 985. 985. 985. 985. 986. 986. 986. 986. 986. 986. 986. 986. 986. 986. 986. 986. 986. 986. 986. 986. 986. 987. 987. 987. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 990. 991. 991. 991. 991. 991. 996. 996. 998. 998. 998. 998. 998. 998. 998. 998. 998. 998. 998. 998. 998. 998. 998. 998. 998. 998. 999. 999.1000.1000.1000.1000.1000.1000.1000.1000.1000.1000.1000.1000.1000.1000.1000.1000.1000.1000.1000.1000.1000.1000.1000.1004.1004.1004.1004.1004.1004.1004.1009.1010.1016.1016.1016.1016.1016.1016.1016.1016.1016.1016.1016.1016.1016.1016.1016.1016.1016.1016.1016.1016.1016.1017.1017.1017.1017.1017.1017.1017.1017.1017.1017.1017.1017.1017.1017.1017.1017.1021.1021.1021.1021.1021.1021.1021.1021.1021.1021.1021.1021.1021.1022.1022.1023.1023.1023.1023.1023.1025.1025.1026.1026.1026.1026.1027.1027.1027.1130.1130.1130.1130.1130.1130.1130.1130.1130.1130.1130.1130.1139.1139.1139.1139.1139.1139.1139.1139.1139.1139.1139.1139.1139.1139.1139.1139.1139.1139.1139.1139.1139.1139.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1141.1142.1142.1142.1142.1142.1142.1142.1142.1142.1142.1142.1142.1142.1149.1149.1149.1149.1149.1149.1149.1162.1162.1162.1162.1162.1162.1162.1162.1162.1162.1164.1164.1164.1164.1164.1164.1164.1164.1164.1164.1165.1165.1165.1165.1165.1165.1165.1165.1165.1165.1165.1165.1165.1165.1165.1165.1166.1166.1166.1166.1667.1677.1681.1681.1682.1687.1688.1688.1688.1688.1688.1688.1688.1688.1688.1694.1696.1696.1696.1696.1696.1696.1696.1696.1696.1696.1696.1696.1696.1696.1696.1696.1696.1696.1696.1696.1696.1696.1697.1697.1697.1697.1697.1697.1697.1697.1697.1697.1697.1699.1709.1709.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1710.1713.1714.1714.1714.1714.1714.1714.1714.1714.1714.1714.1714.1714.1714.1714.1714.1714.1714.1714.1714.1714.1714.1714.1714.1714.1714.1714.1714.1718.1718.1720.1720.1720.1720.1721.1721.1721.1721.1721.1721.1721.1721.1722.1722.1722.1722.1722.1722.1722.1722.1722.1722.1722.1722.1722.1723.1723.1723.1723.1723.1723.1723.1723.1723.1723.1723.1723.1723.1723.1724.1724.1724.1724.1725.1725.1730.1815.1815.1818.1818.1829.1834.1835.1838.1843.1843.1850.1855.1858.1858.1858.1858.1858.1858.1858.1858.1858.1859.1859.1860.1865.1870.1870.1870.1870.1870.1870.1870.1870.1872.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1880.1882.1882.1882.1882.1882.1882.1882.1882.1882.1882.1882.1882.1882.1883.1883.1883.1883.1883.1883.1883.1883.1883.1890.1890.1890.1890.1891.1891.1891.1891.1891.1891.1891.1891.1891.1891.1891.1891.1891.1893.1893.1896.1896.1896.1896.1896.1896.1896.1896.1896.1897.1897.1897.1897.1897.1897.1898.1898.1898.1899.1899.1899.1899.1899.1899.1899.1899.1899.1899.1899.1899.1900.1900.1900.1900.1924.1924.1924.1924.1924.1924.1924.1924.1924.1924.1924.1924.1924.1925.1925.1925.1925.1925.1925.1925.1925.1925.1925.1928.1928.1928.1928.1928.1928.1928.1928.1929.1929.1929.1929.1929.1929.1929.1929.1929.1929.1929.1929.1929.1929.1929.1929.1929.1929.1929.1929.1929.1929.1930.1930.1930.1930.1930.1930.1930.1930.1930.1930.1930.1930.1930.1930.1930.1930.1930.1930.1930.1930.1936.1936.1936.1936.1936.1936.1936.1936.1936.1937.1937.1937.1937.1937.1937.1937.1937.1937.1937.1937.1937.1938.1938.1938.1938.1938.1938.1958.1958.1958.1958.1958.1958.1958.1958.1964.1964.1964.1964.1964.1976.1976.1976.1976.1976.1977.1977.1977.1977.1977.1977.1977.1977.1977.1977.1977.1977.1978.1978.1978.1978.1978.1978.1978.1978.1978.1978.1978.1985.1985.1985.1985.1985.1985.1985.1988.1988.1988.1988.1988.1988.1988.1988.1988.1988.1988.1988.1988.1988.1988.2293.2293.2293.2293.2293.2297.2297.2300.2300.2300.2306.2306.2306.2308.2308.2308.2308.2308.2308.2308.2308.2308.2308.2308.2308.2308.2308.2308.2308.2308.2308.2308.2308.2344.2344.2344.2344.2344.2344.2344.2344.2344.2344.2344.2344.2347.2347.2347.2347.2538.2538.2538.2538.2538.2538.2538.2538.2538.2538.2539.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2540.2542.2543.2543.2543.2543.2543.2543.2543.2543.2543.2543.2543.2543.2543.2543.2543.2544.2544.2544.2544.2544.2544.2545.2545.2545.2545.2545.2545.2545.2545.2545.2545.2545.2545.2546.2546.2546.2546.2546.2546.2546.2546.2548.2548.2548.2549.2549.2550.2550.2550.2550.2550.2550.2747.2747.2750.2750.2750.2750.2750.2750.2750.2750.2750.2750.2750.2750.2750.2750.2750.2750.2750.2764.2764.2764.2765.2765.2765.2765.2765.2765.2765.2765.2765.2765.2765.2765.2765.2765.2765.2765.2765.2765.2765.2768.2768.2768.2770.2770.2770.2770.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2771.2773.2773.2773.2773.2773.2773.2773.2773.2773.2773.2773.2773.2773.2773.2773.2773.2774.2774.2774.2774.2774.2774.2774.2774.2774.2774.2774.2775.2775.2775.2775.2775.2775.2775.2775.2775.2775.2775.2775.2775.2775.2776.2776.2776.2776.2776.2776.2776.2776.2776.2776.2776.2777.2777.2781.2781.2781.2781.2782.2782.2782.2782.2782.2782.2782.2782.2782.2782.2782.2782.2782.2782.2782.2782.2782.2782.2786.2786.2786.2786.2786.2786.2786.2786.2786.2787.2787.2787.2789.2789.2789.2789.2789.2789.2789.2789.2789.2789.2789.2789.2791.2791.2791.2791.2791.2791.2791.2792.2792.2792.2792.2793.2793.2793.2793.2793.2793.2793.2793.2793.2793.2793.2793.2793.2793.2794.2794.2794.2794.2800.2800.2800.2800.2800.2800.2800.2800.2800.2800.2800.2800.2801.2801.2801.2801.2801.2801.2801.2801.2801.2801.2801.2801.2801.2801.2801.2801.2801.2801.2801.2802.2802.2802.2802.2802.2802.2802.2802.2802.2802.2802.2802.2802.2802.2802.2802.2802.2802.2802.2802.2802.2802.2802.2802.2802.2813.2813.2813.2813.2813.2813.2813.2813.2813.2813.2813.2813.2813.2813.2814.2821.2821.2821.2821.2821.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2823.2920.2922.2922.2923.2923.2924.2924.2924.2924.2924.2924.2924.2924.2924.2924.2924.2924.2924.2924.2924.2924.2924.2924.2929.2929.2930.2932.2932.2932.2932.2932.2932.2932.2932.2932.2932.2935.2935.2935.2935.2936.2936.2936.2936.2936.2936.2936.2936.2936.2936.2936.2937.2937.2937.2937.2937.2937.2937.2937.2937.2937.2937.2937.2937.2937.2939.2939.2943.2943.2943.2943.2943.2943.2943.2943.2943.2943.2943.2943.2943.2943.2943.2943.2944.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2945.2946.2946.2949.2950.2950.2950.2953.2953.2953.2953.2953.2953.2955.2955.2955.2955.2966.2966.2966.2966.2967.2968.2968.2968.2968.2968.2968.2968.2968.2968.2968.2968.2968.2968.2969.2969.2969.2969.2969.2969.2969.2969.2969.2969.2969.2969.2969.2969.2969.2969.2969.2969.2969.2969.2969.2969.2969.2969.2969.2969.2969.2970.2970.2970.2970.3663.3663.3663.3663.3663.3663.3663.3663.3663.3663.3663.3663.3663.3663.3663.3663.3663.3663.3663.3663.3663.3668.3668.3668.3668.3669.3669.3669.3669.3669.3669.3669.3669.3669.3669.3669.3669.3669.3669.3669.3669.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3670.3672.3672.3672.3672.3673.3673.3673.3677.3677.3677.3677.3677.3678.3678.3679.3680.3680.3691.3691.3695.3698.3698.3698.3746.3746.3746.3750.3750.3750.3750.3751.3753.3756.3756.3756.3756.3756.3756.3756.3756.3756.3757.3757.3757.3757.3757.3757.3757.3757.3757.3757.3757.3757.3757.3757.3757.3757.3758.3758.3758.3758.3758.3758.3758.3758.3758.3758.3758.3758.3758.3758.3758.3758.3758.3758.3758.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3759.3760.3760.3760.3760.3760.3760.3760.3763.3763.3763.3763.3763.3763.3767.3767.3767.3767.3777.3777.3778.3778.3778.3779.3779.3780.3780.3780.3780.3780.3780.3783.3783.3783.3783.3783.3783.3783.3783.3783.3783.3783.3783.3783.3783.3787.3791.3791.3791.3791.3791.3792.3792.3792.3792.3792.3792.3792.3792.3797.3797.3797.3797.3797.3797.3797.3797.3797.3797.3797.3797.3797.3799.3799.3801.3801.3801.3801.3801.3801.3801.3801.3801.3801.3801.3801.3801.3801.3801.3801.3801.3801.3801.3801.3801.3802.3802.3802.3802.3802.3802.3804.3804.3804.3805.3805.3807.3807.3807.3807.3807.3807.3807.3807.3807.3807.3808.3809.3809.3809.3809.3809.3809.3812.3812.3812.3812.3812.3813.3813.3813.3813.3813.3813.3813.3814.3815.3815.3815.3815.3815.3816.3821.3821.3821.3821.3821.3821.3821.3821.3821.3821.3822.3823.3824.3826.3826.3826.3826.FORTRAN STOP Converting ligand atoms to spheres Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 28 spheres. 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. 17. 18. 19. 20. 21. 22. 23. 24. 25. 26. 27. 28.FORTRAN STOP Adding essential hydrogens to receptor Generating matching spheres for delphi Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 120 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.9046.9047.9048.9049.9050.9051.9052.9053.9054.9055.9056.9057.9058.9059.9060.9061.9062.9063.9064.9065.9066.9067.9068.9069.9070.9071.9072.9073.9074.9075.9076.9077.9078.9079.9080.9081.9082.9083.9084.9085.9086.9087.9088.9089.9090.9091.9092.9093.9094.9095.9096.9097.9098.9099.9100.9101.9102.9103.9104.9105.9106.9107.9108.9109.9110.9111.9112.9113.9114.9115.9116.9117.9118.9119.9120.FORTRAN STOP Generating faster matching2 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 45 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.FORTRAN STOP Coloring matching spheres Generating slower matching3 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 60 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.9046.9047.9048.9049.9050.9051.9052.9053.9054.9055.9056.9057.9058.9059.9060.FORTRAN STOP Coloring matching spheres Adding spheres to electrostatic grid we were asked to cook * CHA* *CHA* 22 we had to cook * C4D* we had to cook * C3D* we had to cook * C2D* we had to cook * C1D* we had to cook * CHD* we had to cook * C4C* we had to cook * C3C* we had to cook * C2C* we had to cook * C1C* we had to cook * CHC* we had to cook * C4B* we had to cook * C3B* we had to cook * C2B* we had to cook * C1B* we had to cook * CHB* we had to cook * C4A* we had to cook * C3A* we had to cook * C2A* we had to cook * C1A* we had to cook * NA * we had to cook * CAA* we had to cook * CBA* we had to cook * CGA* we had to cook * O2A* we had to cook * O1A* we had to cook * CMA* we had to cook * NB * we had to cook * CMB* we had to cook * CAB* we had to cook * CBB* we had to cook * NC * we had to cook * CMC* we had to cook * CAC* we had to cook * CBC* we had to cook * ND * we had to cook * CMD* we had to cook * CAD* we had to cook * CBD* we had to cook * CGD* we had to cook * O2D* we had to cook * O1D* Creating DelPhi electrostatic grid real 0m25.779s user 0m21.918s sys 0m0.568s Adding spheres to tarted electrostatic grid we had to cook * NE2* we had to cook *HNE2* we had to cook *HNE1* we were asked to cook * CHA* *CHA* 22 we had to cook * C4D* we had to cook * C3D* we had to cook * C2D* we had to cook * C1D* we had to cook * CHD* we had to cook * C4C* we had to cook * C3C* we had to cook * C2C* we had to cook * C1C* we had to cook * CHC* we had to cook * C4B* we had to cook * C3B* we had to cook * C2B* we had to cook * C1B* we had to cook * CHB* we had to cook * C4A* we had to cook * C3A* we had to cook * C2A* we had to cook * C1A* we had to cook * NA * we had to cook * CAA* we had to cook * CBA* we had to cook * CGA* we had to cook * O2A* we had to cook * O1A* we had to cook * CMA* we had to cook * NB * we had to cook * CMB* we had to cook * CAB* we had to cook * CBB* we had to cook * NC * we had to cook * CMC* we had to cook * CAC* we had to cook * CBC* we had to cook * ND * we had to cook * CMD* we had to cook * CAD* we had to cook * CBD* we had to cook * CGD* we had to cook * O2D* we had to cook * O1D* Creating DelPhi electrostatic grid real 0m24.421s user 0m21.876s sys 0m0.565s Creating box around spheres we were asked to cook * CHA* *CHA* 22 we had to cook * C4D* we had to cook * C3D* we had to cook * C2D* we had to cook * C1D* we had to cook * CHD* we had to cook * C4C* we had to cook * C3C* we had to cook * C2C* we had to cook * C1C* we had to cook * CHC* we had to cook * C4B* we had to cook * C3B* we had to cook * C2B* we had to cook * C1B* we had to cook * CHB* we had to cook * C4A* we had to cook * C3A* we had to cook * C2A* we had to cook * C1A* we had to cook * NA * we had to cook * CAA* we had to cook * CBA* we had to cook * CGA* we had to cook * O2A* we had to cook * O1A* we had to cook * CMA* we had to cook * NB * we had to cook * CMB* we had to cook * CAB* we had to cook * CBB* we had to cook * NC * we had to cook * CMC* we had to cook * CAC* we had to cook * CBC* we had to cook * ND * we had to cook * CMD* we had to cook * CAD* we had to cook * CBD* we had to cook * CGD* we had to cook * O2D* we had to cook * O1D* Creating chemgrid maps real 0m22.778s user 0m21.878s sys 0m0.216s Atomic solvent excluded volume calculations underway FORTRAN STOP real 20m51.258s user 20m50.663s sys 0m0.171s Checking for WARNINGS in OUTPARM. WARNING--parameters not found for ATOM 4656 FE HEM 819 sqrt(A), sqrt(B), and charge set to 0.0 -- WARNING--parameters not found for ATOM 4742 FE FE 3 sqrt(A), sqrt(B), and charge set to 0.0 Checking for WARNINGS in delphi.log. !!! WARNING: HEM 819 has a net charge of 1.4000 !!! WARNING: FE 3 has a net charge of 1.4000 !!! WARNING: HEM 819 has a net charge of 1.4000 !!! WARNING: FE 3 has a net charge of 1.4000 !!! WARNING: HEM 819 has a net charge of 1.4000 !!! WARNING: FE 3 has a net charge of 1.4000 End of MakeDOCK sphere and grid generation. Grid preparation completed normally. cat: .simjob: No such file or directory [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar [z]inc2smi or [c]atfile? Traceback (most recent call last): File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 26, in ? flag = raw_input('[z]inc2smi or [c]atfile? ') EOFError: EOF when reading a line slept 360 waiting for similar failed to get similars