There are 15 ligand heavy atoms Ligand center of coords (x y z): 1.35413333333333 -0.1636 58.9570666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 10401 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 7276 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 7276 Number of spheres polar: 4375, nonpolar: 1432, out of current total: 7276 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.63700 13.34380 -12.14880 11.83420 46.96020 70.68400 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 809 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 343 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 276 Spheres center of coords (x y z): 6.58810869565217 2.73421231884058 55.8034065217391 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 9.0293121231971 Final number of output spheres is: 120 Number of polar spheres: 58 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 35 Final number of spheres that are from crystallographic ligand: 15