usefragsph not on
There are 15 ligand heavy atoms
Ligand center of coords (x y z): 1.35413333333333 -0.1636 58.9570666666667
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1123
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 587
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 587
Number of spheres polar: 227, nonpolar: 222, out of current total: 587
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.60795 11.33922 -10.13231 9.79009 48.99391 68.88084
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 296
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 248
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 223
Spheres center of coords (x y z): 4.40928206278027 1.43276834080717 55.3327959641256
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.99103671405596
Final number of output spheres is: 60
Number of polar spheres: 30
Number of nonpolar spheres: 24
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 15