DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-5-21.c.bkslab.org 10-Apr-12 19:32:44 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../../lig/db.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1765365 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -18.46700 -18.82700 41.39100 grid max 23.53300 19.67300 78.39100 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 40 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 11.16764 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 3AR_902_1 500 9541 15 1 40.0 0.03 E 3AR_902_1 1 -51.13 -12.91 19.47 -1.38 -45.94 2 3AR_902_1 414 14240 15 1 36.0 0.04 E 3AR_902_1 1 -51.35 -13.97 25.39 -1.47 -41.40 3 3AR_902_1 398 4026 15 1 24.0 0.02 E 3AR_902_1 1 -65.74 -16.49 26.50 -1.45 -57.17 4 3AR_902_1 303 5575 15 1 18.0 0.02 E 3AR_902_1 1 -59.61 -14.94 26.78 -2.00 -49.77 5 3AR_902_1 625 6794 15 1 38.0 0.02 E 3AR_902_1 1 -66.71 -9.92 37.12 -1.04 -40.56 6 3AR_902_1 682 6728 15 1 28.0 0.03 E 3AR_902_1 1 -76.59 -14.04 34.31 -0.84 -57.16 7 3AR_902_1 757 4885 15 1 24.0 0.01 E 3AR_902_1 1 -43.51 -13.32 25.22 -1.66 -33.28 8 3AR_902_1 416 13418 15 1 32.0 0.05 E 3AR_902_1 1 -56.42 -15.51 23.27 -1.74 -50.39 9 3AR_902_1 485 17354 15 1 77.8 0.05 E 3AR_902_1 1 -66.87 -14.28 32.15 -1.81 -50.82 10 3AR_902_1 426 17852 15 1 28.9 0.06 E 3AR_902_1 1 -78.30 -12.58 28.15 -1.75 -64.48 11 3AR_902_1 400 6010 15 1 26.6 0.02 E 3AR_902_1 1 -69.34 -14.88 27.27 -2.07 -59.01 12 3AR_902_1 483 7508 15 1 2.0 0.03 E 3AR_902_1 1 -49.93 -18.85 25.55 -1.76 -44.99 13 3AR_902_1 608 5748 15 1 2.2 0.02 E 3AR_902_1 1 -76.94 -3.76 36.21 -1.32 -45.81 14 3AR_902_1 427 7280 15 1 20.0 0.03 E 3AR_902_1 1 -69.98 -16.21 32.76 -1.02 -54.45 15 3AR_902_1 629 20604 15 1 120.1 0.06 E 3AR_902_1 1 -95.53 -16.05 40.41 -1.48 -72.65 16 3AR_902_1 482 17191 15 1 61.6 0.06 E 3AR_902_1 1 -53.19 -16.60 26.41 -1.79 -45.18 17 3AR_902_1 497 10624 15 1 14.3 0.03 E 3AR_902_1 1 -76.70 -15.04 34.84 -1.56 -58.46 18 3AR_902_1 534 9939 15 1 16.1 0.04 E 3AR_902_1 1 -49.06 -15.08 23.41 -1.71 -42.44 19 3AR_902_1 505 12354 15 1 26.1 0.04 E 3AR_902_1 1 -51.87 -13.45 23.56 -1.36 -43.13 20 3AR_902_1 493 10870 15 1 28.3 0.03 E 3AR_902_1 1 -87.68 -3.65 37.85 -1.38 -54.86 21 3AR_902_1 537 14329 15 1 40.8 0.05 E 3AR_902_1 1 -69.14 -13.14 28.20 -1.93 -56.01 22 3AR_902_1 695 12205 15 1 18.0 0.04 E 3AR_902_1 1 -46.78 -15.27 28.25 -1.13 -34.94 23 3AR_902_1 804 12613 15 1 56.7 0.04 E 3AR_902_1 1 -46.80 -7.59 31.02 -0.71 -24.09 24 3AR_902_1 506 12561 15 1 33.4 0.04 E 3AR_902_1 1 -63.87 -8.32 34.09 -1.38 -39.48 25 3AR_902_1 575 7468 15 1 16.0 0.02 E 3AR_902_1 1 -66.37 -18.06 29.70 -1.51 -56.25 26 3AR_902_1 452 2801 15 1 8.0 0.01 E 3AR_902_1 1 -83.85 -6.78 31.76 -1.89 -60.76 27 3AR_902_1 484 12559 15 1 34.2 0.03 E 3AR_902_1 1 -57.63 -16.93 27.96 -1.53 -48.13 28 3AR_902_1 589 16336 15 1 37.2 0.06 E 3AR_902_1 1 -56.78 -10.89 27.59 -0.88 -40.95 29 3AR_902_1 493 7927 15 1 32.2 0.02 E 3AR_902_1 1 -72.96 -14.69 32.10 -2.09 -57.64 30 3AR_902_1 568 9317 15 1 24.1 0.03 E 3AR_902_1 1 -72.37 -14.72 37.66 -1.81 -51.24 EOF: ../../lig/db.db.gz end of file encountered total minimization steps = 177823 for debugging, time = 1.720000 solvation corrected scores: (a) 1 3AR_902_1 score: -72.655 nathvy = 15 nconfs = 1 2 3AR_902_1 score: -64.483 nathvy = 15 nconfs = 1 3 3AR_902_1 score: -60.760 nathvy = 15 nconfs = 1 4 3AR_902_1 score: -59.014 nathvy = 15 nconfs = 1 5 3AR_902_1 score: -58.465 nathvy = 15 nconfs = 1 6 3AR_902_1 score: -57.641 nathvy = 15 nconfs = 1 7 3AR_902_1 score: -57.174 nathvy = 15 nconfs = 1 8 3AR_902_1 score: -57.156 nathvy = 15 nconfs = 1 9 3AR_902_1 score: -56.245 nathvy = 15 nconfs = 1 10 3AR_902_1 score: -56.009 nathvy = 15 nconfs = 1 11 3AR_902_1 score: -54.859 nathvy = 15 nconfs = 1 12 3AR_902_1 score: -54.449 nathvy = 15 nconfs = 1 13 3AR_902_1 score: -51.238 nathvy = 15 nconfs = 1 14 3AR_902_1 score: -50.815 nathvy = 15 nconfs = 1 15 3AR_902_1 score: -50.395 nathvy = 15 nconfs = 1 16 3AR_902_1 score: -49.773 nathvy = 15 nconfs = 1 17 3AR_902_1 score: -48.132 nathvy = 15 nconfs = 1 18 3AR_902_1 score: -45.942 nathvy = 15 nconfs = 1 19 3AR_902_1 score: -45.807 nathvy = 15 nconfs = 1 20 3AR_902_1 score: -45.179 nathvy = 15 nconfs = 1 21 3AR_902_1 score: -44.992 nathvy = 15 nconfs = 1 22 3AR_902_1 score: -43.126 nathvy = 15 nconfs = 1 23 3AR_902_1 score: -42.443 nathvy = 15 nconfs = 1 24 3AR_902_1 score: -41.396 nathvy = 15 nconfs = 1 25 3AR_902_1 score: -40.954 nathvy = 15 nconfs = 1 26 3AR_902_1 score: -40.564 nathvy = 15 nconfs = 1 27 3AR_902_1 score: -39.478 nathvy = 15 nconfs = 1 28 3AR_902_1 score: -34.936 nathvy = 15 nconfs = 1 29 3AR_902_1 score: -33.282 nathvy = 15 nconfs = 1 30 3AR_902_1 score: -24.087 nathvy = 15 nconfs = 1 Date and Time: 10-Apr-12 19:32:48 elapsed time (sec): 1.7400