usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 30.8029523809524 -10.0518571428571 64.6313333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 913 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 573 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 568 Number of spheres polar: 274, nonpolar: 154, out of current total: 568 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.88196 39.94099 -20.04006 -0.11088 56.08165 74.58678 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 329 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 276 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 249 Spheres center of coords (x y z): 30.2230614056225 -10.7901106425703 66.6487420080321 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.69757795340593 Final number of output spheres is: 60 Number of polar spheres: 31 Number of nonpolar spheres: 9 Number of spheres that are near neither polar nor nonpolar receptor atoms: 20 Final number of spheres that are from crystallographic ligand: 21