usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 32.0266086956522 -9.85404347826087 63.6746086956522 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 926 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 571 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 570 Number of spheres polar: 242, nonpolar: 168, out of current total: 570 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.03952 41.98696 -19.76410 0.06008 55.61423 73.65806 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 326 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 281 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 257 Spheres center of coords (x y z): 30.7309821011673 -9.70959081712062 66.9128928404669 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.11119846764424 Final number of output spheres is: 60 Number of polar spheres: 39 Number of nonpolar spheres: 10 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 23