usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 31.7116470588235 -9.93135294117647 64.0650588235294 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 838 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 559 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 554 Number of spheres polar: 214, nonpolar: 208, out of current total: 554 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 21.90402 41.67242 -19.93097 -0.05353 57.73352 74.02294 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 310 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 265 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 234 Spheres center of coords (x y z): 30.931307948718 -10.0031991452991 66.8695682478633 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.52743069817508 Final number of output spheres is: 60 Number of polar spheres: 33 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 17