name of input pdb file: rec.crg name of output contact grid file: solvmap_sev atomic radii (A): 1. for O N C S P Other [1.4 1.3 1.7 2.22.2 1.8]? 1.600000 1.650000 1.900000 1.900000 1.900000 1.600000 2. for water probe (exclusion) [1.4]? 1.400000 number of grid points/angstrom?(1-4) 2 pdb file of limiting box: box assumed ligand atomic radius (A): 1.400000 maximum receptor atomic radius (A): 1.900000 grid resolution (A): 0.5000000 integration cutoff (A): 10.00000 receptor minimum and maximum x y z (A): 13.72500 -39.64000 32.50700 61.20800 8.680000 84.44400 box minimum and maximum x y z (A): 9.751000 -31.93600 42.87700 52.18000 10.12300 77.28500 dielectric grid expansion size (points/edge) 0 20 20 20 4 20 dielectric grid minimum and maximum x y z (A): 9.751000 -41.93600 32.87700 62.18000 12.12300 87.28500 solvation grid x, y, z dimensions: 84 84 68 finished receptor accessible surface finished initializing dielectric grid finished creating receptor molecular surface grid dV is 9.9471835E-03 Precalculating solvmap lookup table Starting solvmap calculation. 1 / 69 the way there! 2 / 69 the way there! 3 / 69 the way there! 4 / 69 the way there! 5 / 69 the way there! 6 / 69 the way there! 7 / 69 the way there! 8 / 69 the way there! 9 / 69 the way there! 10 / 69 the way there! 11 / 69 the way there! 12 / 69 the way there! 13 / 69 the way there! 14 / 69 the way there! 15 / 69 the way there! 16 / 69 the way there! 17 / 69 the way there! 18 / 69 the way there! 19 / 69 the way there! 20 / 69 the way there! 21 / 69 the way there! 22 / 69 the way there! 23 / 69 the way there! 24 / 69 the way there! 25 / 69 the way there! 26 / 69 the way there! 27 / 69 the way there! 28 / 69 the way there! 29 / 69 the way there! 30 / 69 the way there! 31 / 69 the way there! 32 / 69 the way there! 33 / 69 the way there! 34 / 69 the way there! 35 / 69 the way there! 36 / 69 the way there! 37 / 69 the way there! 38 / 69 the way there! 39 / 69 the way there! 40 / 69 the way there! 41 / 69 the way there! 42 / 69 the way there! 43 / 69 the way there! 44 / 69 the way there! 45 / 69 the way there! 46 / 69 the way there! 47 / 69 the way there! 48 / 69 the way there! 49 / 69 the way there! 50 / 69 the way there! 51 / 69 the way there! 52 / 69 the way there! 53 / 69 the way there! 54 / 69 the way there! 55 / 69 the way there! 56 / 69 the way there! 57 / 69 the way there! 58 / 69 the way there! 59 / 69 the way there! 60 / 69 the way there! 61 / 69 the way there! 62 / 69 the way there! 63 / 69 the way there! 64 / 69 the way there! 65 / 69 the way there! 66 / 69 the way there! 67 / 69 the way there! 68 / 69 the way there! 69 / 69 the way there! successful completion elapsed time (sec): 1962.2499 Sat Oct 15 15:07:18 PDT 2011 rec.crg solvmap_sev 1.60,1.65,1.90,1.90,1.90,1.60 1.4 2 box 1.4 EOI # receptor file # output grid file # radii of oxygen, nitrogen, carbon, sulfur, phosphorus, and "other" atoms. # radius of probe # grid resolution # box file # born radius of ligand atom