usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 59.0461034482759 29.7962068965517 46.8431379310345 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1547 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 870 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 864 Number of spheres polar: 173, nonpolar: 505, out of current total: 864 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 49.18566 68.93591 19.81523 39.73553 39.66494 56.70574 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 477 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 416 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 414 Spheres center of coords (x y z): 58.0449497584541 28.4257984057971 48.7649923913043 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.91691071798027 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 39 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 29