Distance from surface specified: 1.80 There are 36 ligand heavy atoms Ligand center of coords (x y z): -39.9803055555556 64.2014444444444 34.1880277777778 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 16463 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 12051 WARNING: removing a crystallographic sphere that is distance 1.82484876085663 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 12031 Number of spheres polar: 3976, nonpolar: 6765, out of current total: 12031 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -53.97880 -26.01700 50.20580 78.20060 20.18940 48.18120 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1597 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 909 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 821 Spheres center of coords (x y z): -41.1449386114494 65.6960097442144 36.0030898903776 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.447533810398 Final number of output spheres is: 200 Number of polar spheres: 52 Number of nonpolar spheres: 135 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 35