There are 36 ligand heavy atoms
Ligand center of coords (x y z): -39.9803055555556 64.2014444444444 34.1880277777778
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 16463
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 9351
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 9350
Number of spheres polar: 3081, nonpolar: 5286, out of current total: 9350
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -51.97440 -27.98100 52.20640 76.19760 22.20000 46.18600
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1381
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 740
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 674
Spheres center of coords (x y z): -40.5144065281899 66.6005 36.2722679525222
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 8.74292183296323
Final number of output spheres is: 120
Number of polar spheres: 31
Number of nonpolar spheres: 84
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 36