usefragsph not on
There are 29 ligand heavy atoms
Ligand center of coords (x y z): 7.79762068965517 -1.48441379310345 31.5492413793103
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1337
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 861
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 861
Number of spheres polar: 245, nonpolar: 407, out of current total: 861
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.15537 17.63546 -11.42595 8.48652 21.85966 41.18750
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 429
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 377
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 375
Spheres center of coords (x y z): 10.3567930133333 -2.70935869333333 31.3730754133334
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.99064563782523
Final number of output spheres is: 60
Number of polar spheres: 15
Number of nonpolar spheres: 36
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 29