usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): -24.547 64.55 26.3978571428571 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1615 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 987 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 983 Number of spheres polar: 378, nonpolar: 389, out of current total: 983 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -34.51367 -14.62359 56.69131 74.50428 18.22342 36.36648 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 522 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 454 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 450 Spheres center of coords (x y z): -22.9225209111111 65.0809714444444 28.3585396 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.66647093808106 Final number of output spheres is: 60 Number of polar spheres: 27 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 21