usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): 47.9541 53.09575 9.3859
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1412
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 877
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 877
Number of spheres polar: 340, nonpolar: 360, out of current total: 877
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 38.07375 57.92960 43.12808 63.05956 -0.57142 18.69603
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 291
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 223
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 210
Spheres center of coords (x y z): 48.6393595714286 51.9215418095238 6.05721547619047
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.1524024264569
Final number of output spheres is: 45
Number of polar spheres: 11
Number of nonpolar spheres: 24
Number of spheres that are near neither polar nor nonpolar receptor atoms: 10
Final number of spheres that are from crystallographic ligand: 20