usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 25.8509444444444 65.2462777777778 8.58133333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1259 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 893 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 893 Number of spheres polar: 316, nonpolar: 400, out of current total: 893 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 15.85189 35.34222 55.43751 74.90087 -1.30457 14.11581 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 445 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 384 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 383 Spheres center of coords (x y z): 23.9076067362924 65.2012937597911 5.66742266318538 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.37611080446878 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 18