usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): -25.2416315789474 64.6825789473684 25.9254736842105 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1352 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 914 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 914 Number of spheres polar: 298, nonpolar: 435, out of current total: 914 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -34.96144 -15.29077 54.71764 74.67534 20.47588 35.90627 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 463 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 402 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 396 Spheres center of coords (x y z): -23.8375625757576 65.3374874747474 28.7759833838384 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.59763332928363 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 19