usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 26.36508 11.22196 27.02348 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1519 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1068 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1059 Number of spheres polar: 352, nonpolar: 440, out of current total: 1059 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.50796 36.34321 2.39887 21.13900 18.20967 36.94118 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 306 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 242 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 237 Spheres center of coords (x y z): 26.6794230379747 12.5123822362869 28.5783275105485 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.82376547886475 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 25