usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 43.7659375 15.5538125 48.4273125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1155 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 619 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 618 Number of spheres polar: 180, nonpolar: 378, out of current total: 618 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.16631 53.74765 5.82504 25.40051 38.68922 58.39948 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 180 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 150 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 106 Spheres center of coords (x y z): 42.8872851886792 12.7663616981132 48.3876067924528 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.07946876264364 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 16