usefragsph not on
There are 24 ligand heavy atoms
Ligand center of coords (x y z): 40.2131666666667 46.8475 1.20320833333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1372
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 748
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 748
Number of spheres polar: 196, nonpolar: 395, out of current total: 748
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 30.28514 49.75031 36.85203 56.74139 -8.70411 10.10417
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 410
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 369
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 341
Spheres center of coords (x y z): 40.5299748680352 49.6221004985337 0.241608005865102
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.04701488554702
Final number of output spheres is: 60
Number of polar spheres: 17
Number of nonpolar spheres: 36
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 24