usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 1.43963636363636 67.0150606060606 83.5295151515151 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1852 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 997 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 997 Number of spheres polar: 252, nonpolar: 582, out of current total: 997 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.27257 11.41239 57.03006 77.01311 73.55763 93.44677 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 307 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 256 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 231 Spheres center of coords (x y z): 1.28121086580087 67.3059291774892 80.7613558008658 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.27940182982038 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 33